De novo TE library generation

Generate transposable element libraries using RepeatModeler2 (mandatory) and optional Heliano for helitron enrichment. Both tools run on the entire genome assembly with default parameters.


          

          

            

              
              

                

                  

                    

                  

                  

                  

                    

                      

                        
                        

                          
                          
                        

                        

                          

                        

                      

                      

                        
                        

                          
                          
                        

                        

                          

                        

                      

                    

                    

                      

                        
                        
                      

                      

                        
                        
                      

                    

                  

                  
                  

                

                

                  

                    

                      

                        
                      

                      

                        

                          

                        

                      

                    

                    

                  

                

                

                  

                    

                      

                        
                      

                      

                        

                          

                        

                      

                    

                    

                  

                

                

                  

                    

                      

                        
                      

                      

                        

                          

                        

                      

                    

                    

                  

                

                

                  

                    

                      

                        
                      

                      

                        

                          

                        

                      

                    

                    

                  

                

              

            

          

          

            

              
              

                

                  
Select an assembly with finished curation to proceed with annotation.

                  

                    

                  

                

                

                  

                    
Run RepeatMasker and OneCodeToFindThemAll on your curated TE library.